Is there a proper earth ground point in this switch box? Statistics ; Algorithm(ML, DL,.) In the Bioconductor realm, I would then check that package versions are consistent with the version of Bioconductor in use, and would ask more Bioconductor-related questions on the Bioconductor support site. March 1, 2023, 4:56pm You are doing something very wrong when installing your packages. Retrying with flexible solve.Solving environment: Found conflicts! failed UnsatisfiableError: The following specifications were found to be incompatible with the existing python installation in your environment: Specifications: q2-aldex2 -> python=3.6 Your python: python=3.8.15 By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Did any DOS compatibility layers exist for any UNIX-like systems before DOS started to become outmoded? [37] data.table1.12.8 hms0.5.3 lifecycle0.2.0 stringr1.4.0 May be the version has problem How can I do ? [6] htmltools0.5.0 base64enc0.1-3 survival3.2-3 rlang0.4.7 pillar1.4.6 Then I tried running few commands and I hope the information from them will help finding the cause of all the errors: Following successful installation of backports BiocManager::install ("DESeq2") will succeed under 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details, replacement repositories: in your system, start R and enter: Follow It seems that lots of packages, most importantly data.table and lme4, were not properly compiled. [1] en_AU.UTF-8/en_AU.UTF-8/en_AU.UTF-8/C/en_AU.UTF-8/en_AU.UTF-8, attached base packages: [a/s/n]: I'm running into some bad problems installing and using the DESeq2 package for R. I freshly installed R 3.3.1 and Rstudio 0.99.903 on Win7. To view documentation for the version of this package installed [61] curl4.3 R62.4.1 dplyr0.8.5 permute0.9-5 Referenced from: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libR.dylib (which was built for Mac OS X 10.13) to your account. However, I am increasingly thinking it's something to do with how my IT has set permissions that are causing things to quietly fail. Glad everything is finally working now. To learn more, see our tips on writing great answers. It only takes a minute to sign up. Running under: macOS Catalina 10.15.3, Matrix products: default Warning message: CRAN: https://mirrors.sjtug.sjtu.edu.cn/cran/, Bioconductor version 3.12 (BiocManager 1.30.17), R 4.0.3 (2020-10-10), Old packages: 'cli', 'dplyr', 'igraph', 'MASS', 'ps', 'RSQLite', 'testthat', 'tibble', package locift is not available for Bioconductor version '3.12', A version of this package for your version of R might be available elsewhere,see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages. I installed the package successfully with conda, but Rstudio is apparently does not know about it. Author: Michael Love [aut, cre], Constantin Ahlmann-Eltze [ctb], Kwame Forbes [ctb], Simon Anders [aut, ctb], Wolfgang Huber [aut, ctb], RADIANT EU FP7 [fnd], NIH NHGRI [fnd], CZI [fnd], Maintainer: Michael Love
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